BtaEX6031070 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:68035577-68119518:-
Coord C1 exon
chr6:68119311-68119518
Coord A exon
chr6:68097701-68097882
Coord C2 exon
chr6:68035577-68035690
Length
182 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCTCTTTTCTTCTAGTCA
3' ss Score
10.35
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTGCCTGCATGAACATCACCCACAGCCAGTGTCAGATATTGCCCTACTACACCACGCTGACATCTCCCCTCTCCATTGTCAAAAGCATGGAAATGGAGAAGTTCCTCAAATTCTTCACGTACCTCCATCGCCTCGGTTGCTATCAACATATCATGCTTTTTGGCTGCAGCCTGGCCTTTCCCAAGTGCATCAGGGATGGTGCTGACAG
Seq A exon
TCATGGACTCCTGCCTTGTAGATCCTTCTGTGAGTCTGCAAAAGAGGGCTGTGAGTCAGTCCTGGGAATGGTGAATGCCTCCTGGCCCGATTTCCTCAAATGTTCACAGTTTAGAAACCAAAGTGAAAACAGCAATGTCAGCAGGATTTGCTTCTCACCACAGCAGGAAAACGAAAAGCAAT
Seq C2 exon
CGCTCTGCAGAGGGGGCGAGAGCTTTCTGTGCACCAGTGGCATCTGCGTCCCCAGGAAACTGCAGTGTAACGGCTACAACGACTGTGATGACTGGAGTGACGAGGCTCATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PU(56.3=95.7)
A:
PF0139217=Fz=PD(42.9=82.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACATCTCCCCTCTCCAT
R:
CATCACAGTCGTTGTAGCCGT
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]