DreEX6082389 @ danRer10
Exon Skipping
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44153351-44157669:+
Coord C1 exon
chr23:44153351-44153561
Coord A exon
chr23:44157289-44157473
Coord C2 exon
chr23:44157556-44157669
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTGCTGTTGTTGCAGGAC
3' ss Score
9.93
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTATCTGCTCTGACATCACGGAGAGCCAGTGTAACATGCTGCCGTACAACCAGAGCGGTGTGATGGTGGGCCGCAGTGTGGTGAAGAGCAGCGAACTGCAGATGTTCCTTAAGTTCTTCAGCTACCTGAGCCGCCTGTCCTGCTACAGACACATCATGCTGTTCGGATGCTCCATCGCACTCCCACAATGCATCAGCCACAGAGACGGCAG
Seq A exon
GACTCTGGTTCTGCCATGTCAATCGTTCTGTGAAGCAGCTCGTGAGGGCTGTGAGCCGGTGCTACAGATGTTCAATGCCTCCTGGCCAGAGTTCCTGCGCTGCTCTCAGTTCAGCAATAACAGCGGGACAGCAGTGGAGAACACAGCGCTCTGCTACACACCCAAACACGCGCGAGGAAAACTCT
Seq C2 exon
CCGTATGTGGAGGAAACGATCACTTCCTGTGTGCGACTGGAATATGTGTCCCCCTGAAACTAGTGTGCAATGGATACAACGACTGTGACGACTGGAGCGACGAGGCTGATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PU(56.7=95.8)
A:
PF0139217=Fz=PD(42.5=81.0),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCAGTGTAACATGCTGC
R:
GGGGACACATATTCCAGTCGC
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]