MmuEX6018019 @ mm10
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72372098-72435442:-
Coord C1 exon
chr5:72435235-72435442
Coord A exon
chr5:72422025-72422209
Coord C2 exon
chr5:72372098-72372211
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTGTTTGTACTTAGGCA
3' ss Score
9.27
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCACCTGCATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAG
Seq A exon
GCATGGTCTTCTACCCTGTAGATCTTTCTGTGAGGCTGCAAAAGAAGGATGCGAATCTGTCCTGGGAATGGTGAACTCCTCCTGGCCGGATTCCCTCAGATGCTCTCAGTTTAGGGACCACACTGAGACTAACAGCAGTGTCAGAAAGAGCTGCTTCTCACTGCAGCAGGAACATGGAAAGCAAT
Seq C2 exon
CACTCTGTGGAGGGGGCGAGAGCTTCCTGTGTACCAGCGGGCTCTGCGTCCCCAAGAAGCTGCAGTGTAACGGCTATAATGACTGTGATGACTGGAGCGACGAGGCGCATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'10-9,'10-6,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PU(55.8=95.7)
A:
PF0139217=Fz=PD(43.3=82.5),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGTCAAATTCTGCCCT
R:
TACACTGCAGCTTCTTGGGGA
Band lengths:
253-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types