BtaEX6032855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118282738-118287949:+
Coord C1 exon
chr6:118282738-118282844
Coord A exon
chr6:118286688-118286768
Coord C2 exon
chr6:118287855-118287949
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCGAAGGCTTTTCTTCCAGAGC
3' ss Score
4.75
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGGTGCTCTAGAAAAGTTCGAGATTTGTGGTGGCAGGGAATCCCTCCCAGCGTGAGAGGCAAGGTCTGGAGCTTAGCCATTGGCAACGAGTTAAACATCACTCACG
Seq A exon
AGCTCTTCGACATCTGTCTCGCCCGAGCAAAGGAGCGGTGGCGGTCCTTTAGCACGGGAGGCTCTGAAGCGGAGACCGAAG
Seq C2 exon
ATGCTGGTTTTTCAGCAGCAGACAGAGAAGCCAGTCTGGAGCTGATTAAACTGGACATCTCCAGAACATTCCCCAGTCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493-'22-12,'22-10,25-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.062
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(10.8=54.1)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTGGTGGCAGGGAATCC
R:
TGGAAAATGCAGAGACTGGGG
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]