GgaEX1057313 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82879302-82881722:+
Coord C1 exon
chr4:82879302-82879408
Coord A exon
chr4:82880307-82880387
Coord C2 exon
chr4:82881628-82881722
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTCTACTCTTCTTTTTCCAGAGC
3' ss Score
9.68
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGTTGTTCCCGTAAAGTTCGAGAGTTATGGTGGCAGGGCATTCCACCGAGCGTGAGAGGCAAAGTCTGGAGCTTGGCAATTGGCAACGAGTTAAACATCACCCATG
Seq A exon
AGCTATACGATATTTGTCTGGCTCGTGCCAAAGAAAAATGGCGATCACGTAGCACGGTAGGAGCTGAGGTAGAATGTGAAG
Seq C2 exon
ATGCTGGATTTTCTACAGCTGACAGAGAAGCAAGTTTGGAGTTAATAAAACTGGATATCTCAAGAACGTTTCCTAATCTCTGTATATTCCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'21-21,'21-19,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATGGTGGCAGGGCATTC
R:
ACAGAGATTAGGAAACGTTCTTGAGA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]