DreEX0077404 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39423226-39424810:+
Coord C1 exon
chr7:39423226-39423332
Coord A exon
chr7:39424449-39424535
Coord C2 exon
chr7:39424716-39424810
Length
87 bp
Sequences
Splice sites
3' ss Seq
TACATTTACGTTTATAACAGAGC
3' ss Score
5.6
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTGTTCATCGAAGCGGGTGAGGGATTTATGGTGGCAGGGTCTGCCACCCAGTGTGAGGGGTAAAGTCTGGAGTCTGGCAATAGGAAATGAATTGAACATCACAGATG
Seq A exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
Seq C2 exon
ATGCAGGCTTGTCTCATGCTGATCGAGAGGCCAGTCTAGAACTAATCAAGTTAGACATTTCCAGAACATTTCCCAATCTCTGTATATTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-'10-14,'10-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.031
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(18.8=100),PF0056613=RabGAP-TBC=PU(8.7=54.1)
A:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
C2:
PF085986=Sds3=PD(6.3=37.5),PF0056613=RabGAP-TBC=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTGAGGGATTTATGGTG
R:
ACAGAGATTGGGAAATGTTCTGGA
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]