Special

BtaEX6035572 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D (SEMA4D), mRNA. [Source:RefSeq mRNA;Acc:NM_001098160]
Coordinates
chr8:90239005-90246130:+
Coord C1 exon
chr8:90239005-90239227
Coord A exon
chr8:90240273-90240388
Coord C2 exon
chr8:90245958-90246130
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATGCAGCTTTCACCTTGCAGACC
3' ss Score
7.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGTATCAACCGGGAGGCACGGGCGGCCAACTTTTCTAGCTCGCTCAACCTGCCGGACAAGACCCTGCAGTTCGTCAAAGACCACCCCCTGATGGACGACTCCGTGACCCCGATAGACAGTAGGCCCCGGCTGATCAAAGGCGACGTGAACTACACGCAGATTGTGGTGGACAGGGCCCGGGCCCTGGATGGAACCATCCACGACGTCATGTTTGTCAGCACAG
Seq A exon
ACCGGGGAGCCCTGCACAAAGCCATCAGCCTTGAGAATGACATCCACATCATTGAGGAGACTCAGCTCTTCCAGGACTTCGAGCCCATCCAGAGCCTGCTGCTGTCTTCCAAGAAG
Seq C2 exon
GGCAGGAAGTTTGTCTATGCCGGTTCCAACTCAGGCGTGGTGCAGGCCCCTGTGGCCTTCTGCGGGAAGCATGGCACCTGCGAGGACTGCGTGCTTGCCCGGGACCCCTACTGCGCCTGGAGCCCGGCCGTGGCCGCCTGTGTCGCCCTGCACCAGACTGACAGCCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001941-'24-23,'24-21,26-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(71.7=65.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACTTTTCTAGCTCGCT
R:
CACCACGCCTGAGTTGGAAC
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]