DreEX0007794 @ danRer10
Exon Skipping
Gene
ENSDARG00000067801 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr21:2757103-2761311:-
Coord C1 exon
chr21:2761089-2761311
Coord A exon
chr21:2758279-2758394
Coord C2 exon
chr21:2757103-2757272
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGTCGGTGTGTGTTCTCAGATA
3' ss Score
8.42
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TGCATCAATAACATGAACCGTCAGCAGAACATGAGCTCGTCTCTTCATCTGCCTGATAAGACGCTTCAGTTTGTGAGGGATCATCCGCTGCTGGAGGACCCGGTGCTGCCCATAGGAAACGGCCCTCGCCTCATCACTAAAGATGTGAACTACACACAGATCGCCGTGCAGAGGGTGCAAGCGCTCGACAACAGCATACACCACGTCATTTTCACAGCCACCG
Seq A exon
ATAAAGGTTTCCTGCATAAGTCAGTGGTGTTGGAGAATGAGGTTCACACGGTGGAGGAGGTTCAGCTGCTGAAGAACTCAGAGCCCATCAAAACACTCCTGCTCTCCACAGACCAG
Seq C2 exon
GCTCAGTTTCTGTATGCGGGTTCAGACTCAGGAGTGGTTCAGTCACCCACAGCGTTCTGTCAGAAATACGGCTCCTGTGTGGACTGTGTTCTGGCCCGGGACCCATACTGCGCCTGGGACACTCAATCCAAAGCCTGTGTGAACATCTTCCAGAGCAAAGCTGATCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067801-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(71.7=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTCAGCAGAACATGAGC
R:
ACCACTCCTGAGTCTGAACCC
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]