GgaEX1051647 @ galGal3
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
NA
Coordinates
chrZ:42879581-42884673:-
Coord C1 exon
chrZ:42884451-42884673
Coord A exon
chrZ:42883006-42883121
Coord C2 exon
chrZ:42879581-42879753
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACATTGCTGTGTCATTGCAGATC
3' ss Score
9.36
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
TGTATAAACAATGAAGCCAGAGCCTTGAACTACGTGACTTCTCTGAATTTACCAGACAAAACGTTGCAGTTTGTTAAGGACCATCCACTAATGGATGATTCAGTGACTCCAGTGGGAGACAGACCCCGCCTTGTAAAGAGAGATGTGAAATATACGCAGATTGTAGTAGACAGAGTCAGAGCACTCAATGGTACAATATATGATGTTATGTTCATCAGTACAG
Seq A exon
ATCAAGGGGCCCTGCACAAAGCTATCAGCTACGAAAATGGAATGCATATTATAGAAGAAACACAACTTTTCCCAAAGTTTGAGCCAGTTCAGACACTCTTACTTTCATCCAAAAAA
Seq C2 exon
AGCAGAAGATACCTCTACGCTGGTTCAAATTCTGGTGTGGTTCAGTCTCCTGTGGCATTCTGTGACATGTACACCACTTGTTTTGACTGTGTTTTAGCAAGGGATCCTTACTGTGCTTGGAAACCTCTTGAGGGTTCTTGCGTTGATATTTATCAAGAAAGTGAAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697-'12-19,'12-16,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(14.9=100)
C2:
PF0143720=PSI=PU(71.7=65.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGACCCCGCCTTGTAAAG
R:
CGCAAGAACCCTCAAGAGGTT
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]