BtaEX6035864 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101588431-101596084:-
Coord C1 exon
chr8:101595989-101596084
Coord A exon
chr8:101594135-101594230
Coord C2 exon
chr8:101588431-101588524
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGATCTCCTTTCTAGCGA
3' ss Score
9.16
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGTCTGTCGATTCCCATGTCAGAATGGAGGGATCTGCCAACGCCCAAATGCTTGTTCCTGTCCAGATGGCTGGATGGGTCGCCTCTGTGAAGAGC
Seq A exon
CGATCTGCATTCTTCCCTGTCTGAACGGCGGTCGCTGTGTGGCCCCTTATCAATGTGACTGCTCACCTGGCTGGACAGGGTCCCGCTGTCATACAG
Seq C2 exon
CTGTCTGCCAGTCTCCCTGCTTAAATGGTGGAAAATGCGTAAGACCAAACCGATGCCATTGTCTCTCGGCATGGACAGGACATGACTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243-'49-54,'49-53,50-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(9.4=9.1)
A:
PF0000822=EGF=PD(87.5=84.8)
C2:
PF079748=EGF_2=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGAGGGATCTGCCAACG
R:
TGGAACAGTCATGTCCTGTCCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]