DreEX0008539 @ danRer10
Exon Skipping
Gene
ENSDARG00000013526 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr7:24078343-24082954:+
Coord C1 exon
chr7:24078343-24078438
Coord A exon
chr7:24079139-24079234
Coord C2 exon
chr7:24082861-24082954
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGAGTGCTTCTTTCCATAGCGA
3' ss Score
7.84
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTGTCTGTTGGCGCCATTGTCAGAATGGAGGTGTGTGCCAAAGACCAAACACTTGCTCCTGTCCAGAGGGATGGATGGGACGATTTTGTGAAGAGC
Seq A exon
CGATCTGCATCCTACCATGTCTCAATGGAGGACGCTGCGTAGCTCCATACCAGTGTGAATGCCCAGCAGGATGGACGGGCACACGCTGCCACAATG
Seq C2 exon
CGGTGTGTTCCATGCCTTGTTTGAATGGGGGCAGGTGTATCCGACCCAACCGGTGTCACTGCAGTCCAGGATGGGGAGGGTATGACTGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013526_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=75.8),PF0000822=EGF=PU(9.4=9.1)
A:
PF0000822=EGF=PD(87.5=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGCGCCATTGTCAGAAT
R:
AGCAGTCATACCCTCCCCATC
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]