GgaEX6051014 @ galGal3
Exon Skipping
Gene
ENSGALG00000015721 | SVEP1
Description
NA
Coordinates
chrZ:65097121-65102145:-
Coord C1 exon
chrZ:65102050-65102145
Coord A exon
chrZ:65099948-65100043
Coord C2 exon
chrZ:65097121-65097214
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCCCTTCTCCTTAGCAA
3' ss Score
9.05
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGTCTGTCGGTTCCCATGTCAGAATGGTGGAGTCTGTGAGCGACCAAATGCCTGCTCGTGTCCAGATGGCTGGATGGGTCGTCTCTGTGAAGAGC
Seq A exon
CAATATGCATTTTGCCATGTCTCAATGGAGGTCGCTGTGTGGCTCCTTACAAGTGTGACTGCCCCCCTGGATGGACTGGATCGCGGTGCCATACAG
Seq C2 exon
CTGTTTGCCAGTCACCTTGCTTAAATGGTGGGAAGTGCATACGACCAAATCGATGTTACTGTCCCTCATCATGGACTGGACATGATTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721-'54-55,'54-54,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(9.4=9.1)
A:
PF0000822=EGF=PD(87.5=84.8)
C2:
PF079748=EGF_2=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCGGTTCCCATGTCAGA
R:
TGTCCAGTCCATGATGAGGGA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]