BtaEX6035865 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101588109-101594230:-
Coord C1 exon
chr8:101594135-101594230
Coord A exon
chr8:101588431-101588524
Coord C2 exon
chr8:101588109-101588127
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCATGAATTTTTTATCCCAGCTG
3' ss Score
4.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGATCTGCATTCTTCCCTGTCTGAACGGCGGTCGCTGTGTGGCCCCTTATCAATGTGACTGCTCACCTGGCTGGACAGGGTCCCGCTGTCATACAG
Seq A exon
CTGTCTGCCAGTCTCCCTGCTTAAATGGTGGAAAATGCGTAAGACCAAACCGATGCCATTGTCTCTCGGCATGGACAGGACATGACTGTTCCAG
Seq C2 exon
GACAAAGAGAAAGGGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243-'50-55,'50-54,51-55=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.5=84.8)
A:
PF079748=EGF_2=WD(100=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]