GgaEX0023087 @ galGal3
Exon Skipping
Gene
ENSGALG00000015721 | SVEP1
Description
NA
Coordinates
chrZ:65094471-65100043:-
Coord C1 exon
chrZ:65099948-65100043
Coord A exon
chrZ:65097121-65097214
Coord C2 exon
chrZ:65094471-65094489
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTATGTGCATTTATATGCAGCTG
3' ss Score
6.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAATATGCATTTTGCCATGTCTCAATGGAGGTCGCTGTGTGGCTCCTTACAAGTGTGACTGCCCCCCTGGATGGACTGGATCGCGGTGCCATACAG
Seq A exon
CTGTTTGCCAGTCACCTTGCTTAAATGGTGGGAAGTGCATACGACCAAATCGATGTTACTGTCCCTCATCATGGACTGGACATGATTGCTCAAG
Seq C2 exon
AAAACGGAAGGCTGGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721-'55-56,'55-55,56-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.5=84.8)
A:
PF079748=EGF_2=WD(100=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]