GgaEX0023087 @ galGal4
Exon Skipping
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66365631-66373050:-
Coord C1 exon
chrZ:66372955-66373050
Coord A exon
chrZ:66370128-66370221
Coord C2 exon
chrZ:66365631-66368211
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTATGTGCATTTATATGCAGCTG
3' ss Score
6.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAATATGCATTTTGCCATGTCTCAATGGAGGTCGCTGTGTGGCTCCTTACAAGTGTGACTGCCCCCCTGGATGGACTGGATCGCGGTGCCATACAG
Seq A exon
CTGTTTGCCAGTCACCTTGCTTAAATGGTGGGAAGTGCATACGACCAAATCGATGTTACTGTCCCTCATCATGGACTGGACATGATTGCTCAAG
Seq C2 exon
AAAACGGAAGGCTGGATTCTACCACTTCTAACAGCAGAGCAACAGTTTTACACTCAGAAACCTTTCTTCAGCCTAGACAGCGGGGCTCAGAATCTAATGCATTGTAAATCACATCCATTGCTTCCCTTCCCCCCACCTCCTTTGTTTTGTATTTTATTTTGTGATATATTTTTTCTATACCTTTCAATTTTTAAAGAAAACCTCTGTATTTTCCATTTACAAAAGTATTATCAAATATATGCTGCTATATACACACCATACACATACAAAAGTGAAGATCCCTACTGTTCACTGAGAAAGTGGCTGTGTACGGTGAAGTCCCTCCCATTTCTTACACCCGGTAAGCTAATTAAAACATGCTATACTGCCAGCCATGATTAAACAGAATGTTGCAGTTCTGCTTATCATCTGCCAAAGCATACTGAAATCCAGCAACTTAATGGTAAGGAATAATTATGTAAAGCTAATTGAACCACCGAACTTTGCATTGGGCTTGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.5=84.8)
A:
PF079748=EGF_2=WD(100=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACAAGTGTGACTGCCCCC
R:
GGGGAAGGGAAGCAATGGATG
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]