BtaEX6036165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106021301-106023626:-
Coord C1 exon
chr8:106023441-106023626
Coord A exon
chr8:106023108-106023197
Coord C2 exon
chr8:106021301-106021564
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTCATTCTCTCCTAGGGC
3' ss Score
10.49
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGGATGCGCCCAGGAATCTCCGCCGCATCTCCCAGACAGACAACAGCATCACCCTGGAGTGGAGGAACGTCAAGGCAGCCGCCGACAGTTACAGAATTAAGTATGCACCCATCTCTGGAGGCGACCACGCGGAAGTAGAAGTCCCCAGGAGCCAACAGACCACAACCAGAACCACGCTCACAG
Seq A exon
GGCTGAGGCCAGGAACTGAATATGGGATTGGGGTGTCTGCTGTGAAGGGAGACAAGGAGAGTGACCCAGCCACCATCAATGCGGCCACAG
Seq C2 exon
AGCTGGACACACCCAAGGACCTTCGGATTTCTGACCCTACGGAGACCAGCCTGACCCTCGTCTGGCAGACGCCGGTGGCCAAGTTTGACCGTTACCGCCTCAACTACAGTCTTCCCTCGGGCCAGCCAAAGGAGGTGCAGCTCACCAGAGACACTACCTCCTTCGTCCTGAGAGGCCTGGAACCTGGGCAGGAATACAGCATCCTGCTCACAGCAGAGAAAGGCAGACACAAAAGCAAGCCGGCACGGGTGCAGGCGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.839 C2=0.506
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(71.4=95.2)
A:
PF0004116=fn3=PD(27.4=74.2)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAGAAGTCCCCAGGAGCC
R:
GCCCGAGGGAAGACTGTAGTT
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]