MmuEX6093956 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:64006246-64007867:-
Coord C1 exon
chr4:64007682-64007867
Coord A exon
chr4:64007348-64007437
Coord C2 exon
chr4:64006246-64006509
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACCTTCACATTCTCTTCCAGGTC
3' ss Score
12.49
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCTGGATGCTCCCAGGAATCTCCGCCGTGTCTCACAGACAGACAACAGCATCACCTTGGAGTGGAGGAACGTCAAGGCAGACATCGACAGTTACAGAATTAAGTATGCCCCTATCTCTGGAGGTGACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAG
Seq A exon
GTCTAAGGCCCGGAACTGAATATGGGATTGGTGTTTCTGCTGTCAAGGGAGACAAGGAGAGTGATCCAGCAACCATCAATGCGGCCACAG
Seq C2 exon
AAATTGATGCACCCAAGGACTTACGGGTGTCTGAAACCACACAAGACAGTCTGACGTTTTTCTGGACGACACCCCTGGCCAAGTTTGATCGTTACCGCCTCAACTACAGCCTCCCCACAGGCCAGTCGATGGAAGTCCAGCTGCCAAAGGATGCCACCTCCCATGTCCTGACAGACCTGGAGCCAGGGCAAGAATACACTGTTCTCCTCATTGCTGAGAAGGGCAGACACAAGAGCAAGCCTGCACGTGTGAAGGCATCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.742 C2=0.404
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(71.4=95.2)
A:
PF0004116=fn3=PD(27.4=74.2)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGACCATGCTGAGAT
R:
GGCTGTAGTTGAGGCGGTAAC
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types