RnoEX0092214 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79836081-79838548:-
Coord C1 exon
chr5:79838363-79838548
Coord A exon
chr5:79837995-79838084
Coord C2 exon
chr5:79836081-79836344
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACCTGCACATTCTCTTTCAGGTC
3' ss Score
12.1
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCTGGATGCTCCCAGGAATCTCCGTCGCGTCTCACAGACAGACAACAGCATCACCTTGGAGTGGAGGAATGTCAAGGCAGACATTGATAGTTATAGAATTAAGTATGCACCTATCTCTGGAGGTGACCATGCTGAGATAGATGTTCCAAAGAGCCAGCAAGCCACAACCAAAACCACACTCACAG
Seq A exon
GTCTAAGGCCAGGAACTGAATATGGAGTGGGCGTCTCTGCTGTTAAGGGAGACAAGGAGGGCGATCCAGCAACCATCAATGCAGCCACAG
Seq C2 exon
AAATTGATGCACCCAGGGACTTACAGGTGTCTGAGACCACACAAGACAGTCTGACTTTATTCTGGAAGACACCTCTGGCCAAGTTTGATCGTTACCGCCTCAACTACAGCCTCCCCACAGGCCAGTCAATAGAGATTCAGCTGCCAAAGGATGCCACCTCCCATGTCCTGACAGACCTGGAGCCAGGGCAAGAATACACTGTTCTCCTCACCGCTGAGAAGGGCAGACATAAGAGCAAGCCTGCGCGTGTGAAGGCATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=0.839 C2=0.360
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(71.4=95.2)
A:
PF0004116=fn3=PD(27.4=74.2)
C2:
PF0004116=fn3=WD(100=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGACCATGCTGAGAT
R:
GGCTGTAGTTGAGGCGGTAAC
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]