Special

BtaEX6036524 @ bosTau6

Exon Skipping

Gene
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2362335-2365265:-
Coord C1 exon
chr7:2365164-2365265
Coord A exon
chr7:2362826-2362952
Coord C2 exon
chr7:2362335-2362430
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGATGGGTTTGCCCTTACAGGAA
3' ss Score
8.02
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TAGAAGGTGTTTCCAGCCTGAGGATTTCCACTCTGCTTGTCTCTAAAAAGGCTCATCAGAGAAGAAGGAATGGCAGTCAGGTGCCTGCCCGCCATGGTCCGG
Seq A exon
GAATCAGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGATGAGTGGGCGCAGCTGAGTCCGGCCCAGAGGGCCCTGTACAGGGATGTCATGCTCGAGAACTACAGCAACCTGGTGTCCCTGG
Seq C2 exon
AAACAGGACTCTTAGGACCCAAACCAGATATGTTTTCCCAGTTGGGAAAAGGGGAAGAGTGGATGCCAGAGGACTCCTTGGGAGGCTTCTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262-'7-7,'7-6,8-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):

C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGTTTCCAGCCTGAGG
R:
AGACAGAAGCCTCCCAAGGAG
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]