BtaEX6037083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6084934-6088253:+
Coord C1 exon
chr7:6084934-6085118
Coord A exon
chr7:6087325-6087412
Coord C2 exon
chr7:6088179-6088253
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCCTTTCATCGACAGGTG
3' ss Score
11.14
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTGATGTCACCTACAATGTGCCTGACCCGGTGGCCAAGCCATCCTTCCAGCTGCTTGTGAACCTCCAGGAGCCTGAGGCTGAGCAGCAGCGACCCCCCTCACCTGCCTCCTCAGCTGATGATGATGACCCAGCAGCTGACCAGCACCACCAGGAGTACCAGGTGACCCTGGAGGTGTGCACCAG
Seq A exon
GTGGCTGCATGCAGGGTCCTCCAACATGGCGGTCCTGGAGGTGCCCCTACTGTCAGGGTTCCGGGCGGACGTCGAGAGCCTGGAGCAG
Seq C2 exon
CTGCTCCTTGACAAGCACGTGGCACTGAAGAGGTACGAGCTGGCTGGCCGCAGAGTGCTCTTCTACTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076779=A2M_recep=PU(24.2=73.3)
C2:
PF076779=A2M_recep=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCTGCTTGTGAACCT
R:
GTACCTCTTCAGTGCCACGTG
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]