GgaEX0028295 @ galGal3
Exon Skipping
Gene
ENSGALG00000003742 | CPAMD8
Description
NA
Coordinates
chr28:3795595-3800208:+
Coord C1 exon
chr28:3795595-3795833
Coord A exon
chr28:3796919-3797006
Coord C2 exon
chr28:3800134-3800208
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGCTTATGTGGGAAGATG
3' ss Score
2.53
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTGATGTCACATACAACGTGCCGGATCCTATTGCCAAACCAGCATTCCAGCTCCTGGTTAACCTGAAGGAGCCAAAGTCAGAGCAGCATCTCCAAGCTCCAGTTCTGCTGCGCTCTCTCTCTCCAGATGAGAATCGCTCTGAAACCCTTCACAGAGAGAGGGCAGTGGTGGATGATGATGACCCGGCTGCAGATCGGGACCATCAGGAGTACAAAGTGATTCTAGAGACCTGCACAAG
Seq A exon
ATGGCTGCACTCGGGATCCTCTAACATGGCTGTGCTGGAAGTGCCATTGTTCTCAGGGTTTCGTGCAGACATTGAGAGCCTAGAACAG
Seq C2 exon
TTACTGATGAACAAGCAAATCGGACTAAAAAGATACGAAGTGGATGGAAGAAAAGTCTTATTCTACTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742_CASSETTE10
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076779=A2M_recep=PU(24.2=64.7)
C2:
PF076779=A2M_recep=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGCTCCAGTTCTGCTG
R:
AGTCCGATTTGCTTGTTCATCAGT
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]