DreEX0003065 @ danRer10
Exon Skipping
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21262573-21265126:+
Coord C1 exon
chr22:21262573-21262820
Coord A exon
chr22:21262915-21263002
Coord C2 exon
chr22:21265052-21265126
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTGGATTCCCCCCCTCAGGTG
3' ss Score
9.72
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATTGATGTATCCTACAATGTGCCTGATCCTGTGGCCAAACCAGCTTTTCAGTTGAAAGTTGACCTTAAGGAGCCAAGGCAGGAGCAACACATCTTGCCATCCTCACGACACATATCTCCTCGCACACGTTCCCGTGCTGACAACCGCTCAGAGCTGACTCGCAAAAGAAGGGCTCCTGTGGATGACGAGGACCCTGCAGGCCACCAAGATCACCTGGACTACCGTGTTACTTTGGAGGTCTGCACCAG
Seq A exon
GTGGCTACATGTTGGTTCATCCAACATGGCTGTCCTAGAAGTCCCTCTGTTATCTGGTTTCCGTGCAGATATTGAGAGTTTGGAGAGG
Seq C2 exon
CTCTTGCTGGATAAGCGAGTGGGGCTGAAGAGGTACGAAGTAGATGGACGAAAGGTTCTCTTCTACTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530-'39-45,'39-44,40-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076779=A2M_recep=PU(24.2=73.3)
C2:
PF076779=A2M_recep=FE(26.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATATCTCCTCGCACACGT
R:
CTTCAGCCCCACTCGCTTATC
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]