BtaEX6037275 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8900494-8901962:+
Coord C1 exon
chr7:8900494-8900546
Coord A exon
chr7:8900682-8901063
Coord C2 exon
chr7:8901667-8901962
Length
382 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCTGTCTGTCTGCAGCAC
3' ss Score
12.04
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGATGGCTCCGAAGTCAAAAAAGAAGGGGCACCCTGGGAGGGAGCAGAAGAAG
Seq A exon
CACCACCACCACCACCATCAGCAGATGCAGCAGGCCCCGGCCCCCATGCCCCAGCCCCCGCCGCCGCCGCCGCCCCAGCAGCCCCCGCCGCCGCCGCCGCCACCCCAGCAGCAGCCTCCGCAGCAGCCCCCGGCCCCGCCCCCGCCCCCCTCCATGCCACAGCAGGCGGCCCCCGCGATGAAGTCCTCGCCTCCACCCTTCATCGCCGCCCAGGTGCCTGTGCTGGAGCCCCAGCTTCCAGGCAGTGTCTTCGACCCCATCGGCCACTTCACCCAGCCCATCCTGCACCTGCCACAGCCCGAGCTACCCCCTCACCTGCCCCAGCCTCCTGAGCACAGCACTCCGCCTCATCTCAACCAGCACTCGGTGGTCTCTCCTCCAG
Seq C2 exon
CTTTGCACAACGCGCTGCCTCAGCAGCCATCACGGCCCAGTAACCGAGCTGCCGCCTTGCCCCCCAAGGCTTCCCGTCCCCCCACTGTGTCGCCCGCCCTGGCCCAGCCACCCCTCCTCCCGCAGCCCCCCATGGCTCAGCCCCCCCAAGTGCTGCTGCAGGAGGACGAAGAGCCGCCTGCCCCGCCCCTCACCTCCATGCAGATGCAGCTCTACCTGCAGCAGCTGCAGAAGGTGCAGCCCCCCACGCCACTACTCCCTTCCGTGAAGGTGCAGTCGCAGCCCCCGCCCCCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-'16-28,'16-26,17-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCTCCGAAGTCAAAAA
R:
CGACTGCACCTTCACGGAAG
Band lengths:
331-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]