RnoEX0015125 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14228764-14230533:-
Coord C1 exon
chr7:14230481-14230533
Coord A exon
chr7:14229962-14230346
Coord C2 exon
chr7:14228764-14229354
Length
385 bp
Sequences
Splice sites
3' ss Seq
GGGTGTCTCTCTGCCCTCAGCAT
3' ss Score
8.09
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGATGGCTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAAAAAG
Seq A exon
CATCATCACCATCACCACCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCGCCACCTCCACAGCAGCCTCCTCCACCCCCACCTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCCACCCCCACCACCTCCGCCCTCCATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTACCCGTCCTGGAACCACAGCTACCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCAGAGCTGCCTCCTCACCTGCCCCAGCCACCGGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAG
Seq C2 exon
CTTTGCACAATGCGCTGCCCCAACAACCATCTCGGCCCAGCAACCGAGCTGCTGCTCTGCCCCCAAAGCCTGCCCGACCCCCAGCTGTGTCCCCTGCCTTGGCCCAGCCCCCCCTGCTCCCACAGCCACCTATGGCTCAGCCCCCCCAAGTGCTGCTGGAGGATGAAGAGCCGCCTGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCACCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAACAGCAGCTCCAGCAGCAGCCACCACCACCCCCACCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCCCCACCACGACCAGTTCACTTGCCATCCATGCCCTTCTCTGCTCACATTCAGCAGCCCCCACCACCCACAGGACAGCAACCCACCCACCCACCCCCAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'27-34,'27-31,29-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGAAGGGGCACACTGGG
R:
CACAGAAGGGTGGGGTGGAG
Band lengths:
353-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]