DreEX6019000 @ danRer10
Exon Skipping
Gene
ENSDARG00000078904 | brd4
Description
bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
Coordinates
chr3:52951331-52957069:+
Coord C1 exon
chr3:52951331-52951441
Coord A exon
chr3:52951538-52951918
Coord C2 exon
chr3:52956347-52957069
Length
381 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTTCCCTATCTCAGGGA
3' ss Score
9.11
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCCGGAGAAGTCCATGGAGGCGATAAGTGCTGTCAAGACAAAAGGCACTTCCTCCGATTCAGGCAGCAGCAGTGAGTCCAGCTCCTCAGAAAGTGAAGACTCTGAGACAG
Seq A exon
GGATGGCTTCTAAGCCAAAGAAGAGAGGGAGAGGTGAAGGAAAGAAGGCTCATCACCAGACCACGGCTCCAGGCATGCCTCTGCCGCAGGTCCCCCTTCAACCCCAGACCCCTGCTCTGCAACCCAGCATTCAGCTGAAGCAGCAGCAGCCGCAGCATCCCTCTCCAGCTGCTTACATGCCACCTCCCGTCACGGCTCTGGAGCCCTCGCAGCTCCTGGAAAACCCCTTTGACCCTCTGGCTCACTTCATGCACCTTCCCCACCACGCAAACGACTCGTCCTCTCCTGCTCCACCTCACCTCAACGCTCACCCTCCAGGAGGCCCAGTGTCACCTGAGACGCATCCGTTCCTCAACCAGCACCCCATCCTTCCATCCCCAG
Seq C2 exon
CCCTGCACAACGCTTTGCCCCAACAGCCTTCACGGCCCAGTAACAGGGCAGCCCCACTACCTCCTAAACCTCTGCAGCAAAGCACGTCCCAACAGCAGCCACCACCCCAGCAGACCCTGGTGCCCCCACAGCAGCTTCAGCCGCAGCAGCAGCAGCCTGCTCCACCCCAGCAGCAGCACCTCCCTCATCACCCGCTACACGCCCCACAGCAGATGCGCCCAAGGCCGCTATCCCCTCCTACGCTCACACCCCAAGGCCTGCTCTCCTCTCAGCCCCCTCAGATGCTGCTGGAGGATGACGAGGAGCCTGTGCCCTCCATGTCCCTGCCCATGTACTTGCAGCACCTACAGCCCAACCGACTACAGGCAACGCCGACATCACTGATGCAGTCGCTGCAGAGCAGGCCTCAGCCGCCAGGACAGCCGTCTCTGCTGCAGTCGGTGCAGGTTCAATCTCACTTGCCCCCTCCGCAGCTTCCCGTTCAGACTCAAGTGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078904-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGGAGGCGATAAGTGC
R:
GTGTGAGCGTAGGAGGGGATA
Band lengths:
350-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]