RnoEX0015124 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14229962-14239274:-
Coord C1 exon
chr7:14239164-14239274
Coord A exon
chr7:14230481-14230533
Coord C2 exon
chr7:14229962-14230346
Length
53 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCTTTTCTCTGCAGAGA
3' ss Score
12.3
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGAAAAAGTTGATGTGATTGCTGGTTCTTCCAAGATGAAGGGCTTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCTAGCTCCTCTGACAGTGAAGACTCTGAAACAG
Seq A exon
AGATGGCTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAAAAAG
Seq C2 exon
CATCATCACCATCACCACCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCGCCACCTCCACAGCAGCCTCCTCCACCCCCACCTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCCACCCCCACCACCTCCGCCCTCCATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTACCCGTCCTGGAACCACAGCTACCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCAGAGCTGCCTCCTCACCTGCCCCAGCCACCGGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'24-31,'24-30,27-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000091368fB2075
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTGAGTCGGAGAGCAC
R:
GGAGGAGGCTGCTGTGGA
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]