BtaEX6037276 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8891373-8901063:+
Coord C1 exon
chr7:8891373-8891483
Coord A exon
chr7:8900494-8900546
Coord C2 exon
chr7:8900682-8901063
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTTACCTCCACAGAGA
3' ss Score
10.51
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTGAGAAAGTTGATGTCATTGCTGGCTCCTCCAAGATGAAGGGCTTCTCATCCTCAGAGTCGGAGAGCACCAGCGAGTCCAGCTCCTCTGACAGCGAAGACTCTGAAACAG
Seq A exon
AGATGGCTCCGAAGTCAAAAAAGAAGGGGCACCCTGGGAGGGAGCAGAAGAAG
Seq C2 exon
CACCACCACCACCACCATCAGCAGATGCAGCAGGCCCCGGCCCCCATGCCCCAGCCCCCGCCGCCGCCGCCGCCCCAGCAGCCCCCGCCGCCGCCGCCGCCACCCCAGCAGCAGCCTCCGCAGCAGCCCCCGGCCCCGCCCCCGCCCCCCTCCATGCCACAGCAGGCGGCCCCCGCGATGAAGTCCTCGCCTCCACCCTTCATCGCCGCCCAGGTGCCTGTGCTGGAGCCCCAGCTTCCAGGCAGTGTCTTCGACCCCATCGGCCACTTCACCCAGCCCATCCTGCACCTGCCACAGCCCGAGCTACCCCCTCACCTGCCCCAGCCTCCTGAGCACAGCACTCCGCCTCATCTCAACCAGCACTCGGTGGTCTCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-'14-26,'14-24,16-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCATTGCTGGCTCCTCC
R:
GCCTGCTGCATCTGCTGAT
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]