BtaEX6037277 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8890011-8900546:+
Coord C1 exon
chr7:8890011-8890306
Coord A exon
chr7:8891373-8891483
Coord C2 exon
chr7:8900494-8900546
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCCCGTTGCTTTATTGCAGCTG
3' ss Score
9.89
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
Exon sequences
Seq C1 exon
CAAGAAGGAGCCAGCACCCTTGAAGAGCAAGCCCCCTCCCGCCTATGAGTCGGAGGAAGAGGACAAATGCAAGCCCATGTCATATGAGGAAAAGCGGCAGCTGAGCCTGGACATCAACAAACTGCCTGGCGAGAAGCTGGGCCGCGTGGTGCACATCATTCAGTCGAGGGAGCCCTCCCTCAAGAACTCCAACCCCGACGAGATCGAGATTGACTTCGAGACCCTGAAGCCATCCACCCTGCGTGAACTGGAGCGCTACGTCACCTCCTGTTTGCGGAAGAAGAGGAAACCTCAAG
Seq A exon
CTGAGAAAGTTGATGTCATTGCTGGCTCCTCCAAGATGAAGGGCTTCTCATCCTCAGAGTCGGAGAGCACCAGCGAGTCCAGCTCCTCTGACAGCGAAGACTCTGAAACAG
Seq C2 exon
AGATGGCTCCGAAGTCAAAAAAGAAGGGGCACCCTGGGAGGGAGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-'13-24,'13-20,14-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGCCTGGACATCAACAA
R:
CTTCTTCTGCTCCCTCCCAGG
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]