RnoEX0015122 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14230481-14240526:-
Coord C1 exon
chr7:14240231-14240526
Coord A exon
chr7:14239164-14239274
Coord C2 exon
chr7:14230481-14230533
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTGTTTGGGTTGCAGCTG
3' ss Score
7.78
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
CAAGAAGGAACCAGCACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAAGAGGACAAGTGTAAGCCTATGTCTTATGAGGAGAAGCGACAGCTAAGTCTAGATATCAACAAACTTCCTGGTGAGAAGCTAGGCCGTGTAGTACACATAATTCAGTCGAGGGAACCATCACTTAAAAACTCCAACCCTGATGAGATTGAGATTGATTTTGAGACCCTGAAGCCATCTACACTACGAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAG
Seq A exon
CTGAAAAAGTTGATGTGATTGCTGGTTCTTCCAAGATGAAGGGCTTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCTAGCTCCTCTGACAGTGAAGACTCTGAAACAG
Seq C2 exon
AGATGGCTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'23-30,'23-27,24-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTATGAGGAGAAGCGACAGC
R:
CCCAGTGTGCCCCTTCTTTTT
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]