DreEX6019001 @ danRer10
Exon Skipping
Gene
ENSDARG00000078904 | brd4
Description
bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
Coordinates
chr3:52949100-52951918:+
Coord C1 exon
chr3:52949100-52949476
Coord A exon
chr3:52951331-52951441
Coord C2 exon
chr3:52951538-52951918
Length
111 bp
Sequences
Splice sites
3' ss Seq
CAAATGTTCTCATCCTTCAGTTC
3' ss Score
7.56
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAAGAAGGAGGGAGGAAAGAGCAACCGCTCCATGGCTCCTCCAGGTGCCGCCCCACCAACTCTGCAGCCTGTGCCAGGTCTGGATACTGAAGAGGATCTGGGTCTTACTGGAGGGGCTGCGATGGCAGGCATGGCCGCGGGGGAGAAGTGTAAACCCATGTCCTATGAAGAGAAGAGACAGCTGAGTCTGGACATTAACAAGCTGCCTGGAGACAAGCTGGGCCGAGTGGTTCATATCATTCAGTCCCGCGAGCCTTCACTCAAGAACTCCAACCCGGACGAGATTGAGATCGACTTCGAGACGTTAAAACCTTCAACGCTGCGGGAGCTGGAGAGATACGTGTCGTCCTGTCTTCGCAAGAAGAAGAAACCAGCCG
Seq A exon
TTCCGGAGAAGTCCATGGAGGCGATAAGTGCTGTCAAGACAAAAGGCACTTCCTCCGATTCAGGCAGCAGCAGTGAGTCCAGCTCCTCAGAAAGTGAAGACTCTGAGACAG
Seq C2 exon
GGATGGCTTCTAAGCCAAAGAAGAGAGGGAGAGGTGAAGGAAAGAAGGCTCATCACCAGACCACGGCTCCAGGCATGCCTCTGCCGCAGGTCCCCCTTCAACCCCAGACCCCTGCTCTGCAACCCAGCATTCAGCTGAAGCAGCAGCAGCCGCAGCATCCCTCTCCAGCTGCTTACATGCCACCTCCCGTCACGGCTCTGGAGCCCTCGCAGCTCCTGGAAAACCCCTTTGACCCTCTGGCTCACTTCATGCACCTTCCCCACCACGCAAACGACTCGTCCTCTCCTGCTCCACCTCACCTCAACGCTCACCCTCCAGGAGGCCCAGTGTCACCTGAGACGCATCCGTTCCTCAACCAGCACCCCATCCTTCCATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078904-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCTGCCTGGAGACAAG
R:
TGGTCTGGTGATGAGCCTTCT
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]