BtaEX6037301 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043971 | NOTCH3
Description
notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
Coordinates
chr7:8946210-8947448:+
Coord C1 exon
chr7:8946210-8946435
Coord A exon
chr7:8946841-8947042
Coord C2 exon
chr7:8947295-8947448
Length
202 bp
Sequences
Splice sites
3' ss Seq
CGCCCCTCCTTTCCCTCCAGCTC
3' ss Score
11.44
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ACCCCTGCCTGAATGGTGGCTCATGTCAGGATGGGGTGGGCTCCTTTTCCTGCTCCTGCCTCCCTGGCTTTGCTGGTCCTCGCTGTGCCCGAGACGTGGACGAGTGTCTGAGCAGCCCCTGCGGCTCAGGCACCTGCACAGACCACGTGGCCTCCTTCACCTGCACCTGCCCACCGGGTTATAGCGGCTTCCACTGCGAGCAGGACCTCCCCGACTGCAGTCCCAG
Seq A exon
CTCCTGCTTTAATGGAGGGACCTGCGTGGATGGTGTGAACTCATTCACCTGCCTGTGCCGCCCGGGCTACACTGGCACACACTGCCAACATGAAGCGGACCCTTGCCTCTCGCGGCCCTGCATGCACGGGGGCGTCTGCACTGCCGCCCACCCTGGCTTCCACTGCGCCTGCCCAGACGGCTTCACCGGCGCTCAGTGCCAG
Seq C2 exon
ACGCTGGTGGACTGGTGCAGCCGCTCGCCCTGTCAGAATGGGGGTCGCTGTGCCCGAACGGGGGCCTCTTTCTACTGCCTTTGCCCCCCTGGGTGGAGCGGCCGCCTATGTGACATCCGGAGCCTGCCCTGCAGAGAGGCCGCAGCCCAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043971-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=35.5),PF0000822=EGF=WD(100=38.2),PF0000822=EGF=PU(9.7=3.9)
A:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
C2:
PF0000822=EGF=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAATGGTGGCTCATGTC
R:
GGGGGCAAAGGCAGTAGAAAG
Band lengths:
308-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]