MmuEX6076739 @ mm10
Exon Skipping
Gene
ENSMUSG00000038146 | Notch3
Description
notch 3 [Source:MGI Symbol;Acc:MGI:99460]
Coordinates
chr17:32146981-32147990:-
Coord C1 exon
chr17:32147765-32147990
Coord A exon
chr17:32147262-32147463
Coord C2 exon
chr17:32146981-32147128
Length
202 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGTCCTGTTCTCCAGTTC
3' ss Score
8.76
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACCCGTGCCTCCATGGTGGCTCCTGCCAGGATGGCGTGGGCTCCTTTTCCTGTTCTTGCCTCGACGGCTTTGCTGGTCCTCGCTGTGCCCGAGATGTGGACGAATGTCTGAGCAGCCCCTGTGGCCCTGGCACCTGTACTGATCACGTGGCCTCCTTCACCTGTGCCTGTCCACCTGGTTATGGAGGCTTCCACTGTGAGATTGACTTGCCGGACTGCAGCCCCAG
Seq A exon
TTCCTGCTTCAATGGAGGGACCTGTGTGGATGGCGTGAGCTCCTTCAGCTGTCTGTGTCGCCCCGGCTACACAGGCACACACTGCCAATACGAGGCTGACCCCTGCTTTTCCCGGCCCTGTCTGCACGGGGGCATCTGCAACCCCACCCACCCAGGATTTGAATGCACCTGCCGGGAGGGCTTCACTGGGAGTCAGTGTCAG
Seq C2 exon
AACCCAGTGGACTGGTGCAGCCAGGCACCCTGTCAGAATGGGGGTCGCTGTGTCCAGACTGGGGCTTACTGCATTTGTCCACCTGGATGGAGTGGCCGCCTGTGCGACATACAAAGCCTGCCCTGCACGGAGGCCGCAGCCCAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038146-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=35.5),PF0764510=EGF_CA=WD(100=47.4),PF0000822=EGF=PU(9.7=3.9)
A:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
C2:
PF0000822=EGF=WD(100=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTGTTCTTGCCTCGACG
R:
AGGCTTTGTATGTCGCACAGG
Band lengths:
300-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types