BtaEX6037764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009071 | ZNF699
Description
zinc finger protein 699 [Source:HGNC Symbol;Acc:HGNC:24750]
Coordinates
chr7:15302198-15312968:-
Coord C1 exon
chr7:15312842-15312968
Coord A exon
chr7:15304002-15304182
Coord C2 exon
chr7:15302198-15303647
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCTACTTTGTTTCAGGTT
3' ss Score
10.48
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACACAGTGGTCTTCGAGGATGTGGCTGTGGACTTTACCCAAGAGGAGTGGGCTCTGCTGAATCTCGCTCAGAGAAACCTCTACAGAGATGTGATGCTGGAAAACTTCCGGAACCTGGCCTCATTAG
Seq A exon
GTTTCGAGATTCAACTTAAAATTAATGAATCAGTTGCTCCACAAGATGCTTATGGAAAAATATCCAATGAACAGGATGTAGCAGGATTCAAAAAGAGTGATTCCTCATTGTCCATTTTACATAAAATCTGGGAATACCATGATGTTGATTATCAGAACAAAAACCACAAGAGAAGTTTGAG
Seq C2 exon
AATTCATGGGATTGAGAACATCTATGAACATAATGAAGAAAATCAGTGTGGCCAAACCGTCAGCCAAATTTCACATCTTAATATACCCAAGAGAACTACTGAAGTAAGAGCCTATGAGTGCCATGTGTGTAAAAAGGCCTTCATAGATCATTTATCCCTGAAGAATCACATTAGGTCTCACACTGGTAGCAAACCCTATCAGTGTAAGGAATGTGGGAAAGCTTTCCATTTTTTTGCTTGTTTTAAAAAGCATATGAAAACTCCCACTGAAGAGAAACCCTACGAATGTCAGGAATGTACCAAAGCCTTCAGTTGTTCTTCCTTCTTTCGGGCACATATGAAGATTCATGCAGGAAAGACAAATTGCGAATGCAGGGAATGTGGGAAAACCTTTAGCTGTTCTTCATCCCTCACAGAACACAAAAGAATTCATAGTGGAGATAAGCCTTATGAATGTAAGGAGTGTGGGAAAGCCTTTAGCTGTTCCTCCTCACTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009071-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.008
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCGAGGATGTGGCTGTG
R:
ACACACATGGCACTCATAGGC
Band lengths:
248-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]