BtaEX6038042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16383714-16384968:+
Coord C1 exon
chr7:16383714-16383913
Coord A exon
chr7:16384261-16384428
Coord C2 exon
chr7:16384843-16384968
Length
168 bp
Sequences
Splice sites
3' ss Seq
GGCGTCTCCCCCCGCTGCAGGTG
3' ss Score
8.61
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGGAGAAGGCAGAGCCTCCACAAGCAATGAATGCCCTGATGAGACTGAACCAGCTCAAACCAGGGCTGCAGTACAAACTGATTTCCCAGACCGGTCCAGTGCACGCCCCCATTTTTACCATGTCAGTTGAGGTGGACGGGAGCTCCTTCGAGGCCTCTGGGCCCTCCAAAAAGACGGCCAAGCTGCACGTGGCTGTGAAG
Seq A exon
GTGTTACAGGACATGGGCTTGCCCACGGGTGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCCGCTGAGGAGACAGAGGCAAAGCCTGCCGTGGTGGCCCCTCCACCTGTGGTGGAAACCGTCTCGACGCCCAGTGCTGCCTTCCCCTCTGATCCCACCACCGAG
Seq C2 exon
CAGGGGCCGATCCTGACCAAGCATGGCAAGAACCCTGTTATGGAACTTAACGAGAAGAGGCGTGGCCTCAAGTACGAACTCATCTCAGAGACAGGGGGCAGCCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-'12-17,'12-14,13-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=1.000 C2=0.905
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.6=86.6)
A:
PF0003520=dsrm=PD(6.2=7.1)
C2:
PF0003520=dsrm=PU(50.8=76.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGATGAGACTGAACCA
R:
GAGTTCGTACTTGAGGCCACG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]