DreEX0039201 @ danRer10
Exon Skipping
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13710500-13713044:+
Coord C1 exon
chr3:13710500-13710705
Coord A exon
chr3:13710962-13711114
Coord C2 exon
chr3:13712907-13713044
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACTTTGATCTGTTTCTCCAGGTC
3' ss Score
11.11
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTCCAGACGAGAAAGCGGAGCCTGCACAGGCCATGAACGCTCTCATGCGACTGAATCAGCTGAAGCCGGGCCTGCAGTATAAACTCATCTCTCAGACCGGGCCTGTTCATGTTCCTGTGTTCACCATGTCTGTAGAAGTGGATGGAAAGAACTTTGAAGCCTCCGGTCCCTCCAAACGCACTGCAAAACTACACGTTGCTGTCAAG
Seq A exon
GTCTTGCAAGACATGGGTCTGCCCACAGGAATGGACCAGAAGACCACTGAACTGATGAAGGTGGACGAGCCGGTGAGCACACAGGAGACTTTGCCCCCAGTCATCAAAATGGAGCCAGAACCTGTACCAATTACAGAAACCCCAACTGACGAG
Seq C2 exon
AATGCTCGACAGCAGGGACCCATCCTGACCAAACATGGCAAGAACCCAGTGATGGAGCTCAATGAGAAACGCAGAGGGCTGAAGTATGAGCTCATCTCTGAGACCGGGGGAAGCCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-'15-25,'15-23,17-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=0.957 C2=0.906
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.6=84.1)
A:
PF0003520=dsrm=PD(6.2=7.8)
C2:
PF0003520=dsrm=PU(50.8=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGCCTGCAGTATAAACTC
R:
CCGGTCTCAGAGATGAGCTCA
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]