Special

MmuEX0024064 @ mm10

Exon Skipping

Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21397469-21399250:+
Coord C1 exon
chr9:21397469-21397668
Coord A exon
chr9:21397969-21398136
Coord C2 exon
chr9:21399125-21399250
Length
168 bp
Sequences
Splice sites
3' ss Seq
CAGGTCTGTCTGCTCCACAGGTG
3' ss Score
9.28
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGGAGAAGGCTGATCCTCCTCAAGCTATGAATGCCCTGATGAGGTTAAATCAGCTGAAGCCAGGGCTGCAGTACAAGCTGATCTCCCAGACAGGCCCTGTTCATGCTCCCATCTTCACCATGTCTGTGGAGGTAGACGGCAGTAACTTCGAGGCCTCGGGGCCATCTAAAAAGACTGCCAAGCTTCATGTAGCTGTGAAG
Seq A exon
GTGTTACAGGACATGGGCTTGCCAACAGGCGCTGAAGGCAGAGACTCCAGCAAGGGGGAAGACTCCGCTGAGGAGTCAGATGGGAAGCCAGCAATAGTGGCCCCACCCCCTGTGGTGGAAGCTGTCTCCAACCCCAGTTCTGTCTTCCCTTCAGATGCCACTACTGAG
Seq C2 exon
CAGGGACCGATTTTGACTAAGCATGGCAAGAACCCTGTTATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTGAGACGGGGGGCAGCCACGACAAAAGGTTTGTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





Show structural model

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.754 A=0.960 C2=0.899
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0003520=dsrm=PU(90.6=86.6)

							
A:
PF0003520=dsrm=PD(6.2=7.1)

							
C2:
PF0003520=dsrm=PU(50.8=76.2)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000149483





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000065770, ENSMUSP00000111074, ENSMUSP00000149786, ENSMUSP00000150280, ENSMUSP00000150586, ENSMUSP00000151032
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr19:10682537-10682704 
HIGH PSI
HsaEX0031554
(ILF3)
Human
(hg19)
chr19:10793213-10793380 
HIGH PSI
HsaEX0031554
(ILF3)
Rat
(rn6)
chr8:22433567-22433734 
HIGH PSI
RnoEX0043978
(Ilf3)
Cow
(bosTau6)
chr7:16384261-16384428 
HIGH PSI
BtaEX6038042
(ILF3)
Chicken
(galGal4)
chrUn_AADN03017000:235-405 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr3:13710962-13711114 
HIGH PSI
DreEX0039201
(ilf3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGGCTGCAGTACAAGCTGATC

				
R: 
CAAACCTTTTGTCGTGGCTGC

				
Band lengths: 
256-424

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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