BtaEX6038206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17021367-17022515:-
Coord C1 exon
chr7:17022402-17022515
Coord A exon
chr7:17021584-17021807
Coord C2 exon
chr7:17021367-17021420
Length
224 bp
Sequences
Splice sites
3' ss Seq
GCGGTCCCCCTGGCCCGCAGGCC
3' ss Score
8.7
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
Exon sequences
Seq C1 exon
GCGCCGCTGCAGGACTGGGGAGAGGAGACCGAGGACGGCGCGGTGTACAGTGTCTCCCTGCGGCGGCAGCGCAGTCAGCGTTCGAGTCCGGGGGCAGGGCCCCGGGTCACCCAG
Seq A exon
GCCCTCAACCCCGCGCCCGACACCTTCCTTCATTACCGCACCAGCAAGGTGCGGGCGCTGAGGGCGGCGCGGCTGGAGCGGCTAGTGAGGGAGTTGGTGTCCGGAGATCCCGAGCAGGACCCAGGCTTCGTGCCCGCCTTTCTGGCCACCCACCGGGCCTTCGTGCCTACTGGCCGCGTGCTGGGCCTCCTCCTGCCACCACCTGCGCCGCCACTCCCGCCCGG
Seq C2 exon
GGTGGAAATCAAGAAAACAGAAGGAAGAGATCTGACTTTCAACAAGAACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-'1-3,'1-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=0.227 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(52.3=74.7)
C2:
PF0061815=RasGEF_N=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCAGGACTGGGGAG
R:
CTCAAGTTCTTGTTGAAAGTCAGA
Band lengths:
164-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]