MmuEX0039594 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21987851-21988959:-
Coord C1 exon
chr9:21988849-21988959
Coord A exon
chr9:21988046-21988275
Coord C2 exon
chr9:21987851-21987904
Length
230 bp
Sequences
Splice sites
3' ss Seq
ACTGCCCCACTCCCCCGCAGACC
3' ss Score
10.71
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GCGCCGCTGCAGGACTGGGGCGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCGACCCCAGAGAGGTCTGGAGAAGGCCAG
Seq A exon
ACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACCGCCGCCGCCACCACCTCCTGCTGG
Seq C2 exon
GGTAGACAGCAAGAGGACAGAGGGACAAGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=0.403 C2=0.720
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(53.2=75.3)
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTGGGGCGAGGAG
R:
CTCAGGTTCTTGCTGAAGTTCA
Band lengths:
156-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types