MmuALTA0015182-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21987851-21988275:-
Coord C1 exon
chr9:21988046-21988275
Coord A exon
chr9:21987896-21987904
Coord C2 exon
chr9:21987851-21987895
Length
9 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
GATAGAGGCTTTCTTCCCAGGGT
3' ss Score
2.73
Exon sequences
Seq C1 exon
ACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACCGCCGCCGCCACCACCTCCTGCTGG
Seq A exon
GGTAGACAG
Seq C2 exon
CAAGAGGACAGAGGGACAAGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-3-8,3-7,3-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.720
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(53.2=75.3)
A:
NA
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGTACCCACAGCCC
R:
TCAGATCTTGTCCCTCTGTCCT
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types