HsaALTA1056356-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11416614-11417059:-
Coord C1 exon
chr19:11416836-11417059
Coord A exon
chr19:11416663-11416667
Coord C2 exon
chr19:11416614-11416662
Length
5 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
GCTGGGGGGCCTCTTCCCAGGGT
3' ss Score
3.73
Exon sequences
Seq C1 exon
GCTCCCAGCCCCATTGCCAATACCTTCCTCCACTATCGAACCAGCAAGGTGAGGGTGCTGAGGGCAGCGCGCCTGGAGCGGCTGGTGGGAGAGTTGGTGTTTGGAGACCGTGAGCAGGACCCCAGCTTCATGCCCGCCTTCCTGGCCACCTACCGGACCTTTGTACCCACTGCCTGCCTGCTGGGCTTTCTGCTGCCACCAATGCCACCGCCCCCACCTCCCGG
Seq A exon
GGTAG
Seq C2 exon
AGATCAAGAAGACAGCGGTACAAGATCTGAGCTTCAACAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-9-9,9-8,9-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(52.3=74.7)
A:
NA
C2:
PF0061815=RasGEF_N=FE(21.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGTACCCACTGCCTG
R:
GCTCAGATCTTGTACCGCTGT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains