RnoALTA0033701-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22998889-22999299:-
Coord C1 exon
chr8:22999070-22999299
Coord A exon
chr8:22998934-22998942
Coord C2 exon
chr8:22998889-22998933
Length
9 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
GATAGAGCCTTTTTTCTCAGGGT
3' ss Score
2.97
Exon sequences
Seq C1 exon
ACCCCCATCCCGGCTATGGATACCTTCCTTCAGTACCGTACCAGCAAGGTGCGAGCACTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTTGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTGCCCACGGCCCGCGTTCTGGGCTTTCTGCTACCCCCGCCGCCGCCGCCGCCACCACCACCTGCTGG
Seq A exon
GGTAGACAG
Seq C2 exon
CAAGAGGACAGAAGGACAGGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-4-5,4-4,4-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.632
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(53.2=75.3)
A:
NA
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGGCTTTCTGCTACCC
R:
CTCAGGTTCTTGCTGAAGTTCA
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]