RnoEX0075476 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22998889-22999989:-
Coord C1 exon
chr8:22999879-22999989
Coord A exon
chr8:22999070-22999299
Coord C2 exon
chr8:22998889-22998942
Length
230 bp
Sequences
Splice sites
3' ss Seq
ACTGCCCCATTTCCCTGCAGACC
3' ss Score
11.51
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
GCACCACTACAGGACTGGGGAGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCAACCCCAGAGGGGTCTGGAGACGGCCAG
Seq A exon
ACCCCCATCCCGGCTATGGATACCTTCCTTCAGTACCGTACCAGCAAGGTGCGAGCACTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTTGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTGCCCACGGCCCGCGTTCTGGGCTTTCTGCTACCCCCGCCGCCGCCGCCGCCACCACCACCTGCTGG
Seq C2 exon
GGTAGACAGCAAGAGGACAGAAGGACAGGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.390 C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(53.2=75.3)
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACTACAGGACTGGGGAG
R:
CTCAGGTTCTTGCTGAAGTTCA
Band lengths:
164-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]