BtaEX6038217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17010810-17012079:-
Coord C1 exon
chr7:17012011-17012079
Coord A exon
chr7:17011830-17011926
Coord C2 exon
chr7:17010810-17010962
Length
97 bp
Sequences
Splice sites
3' ss Seq
AGATTCTGTGTCTCCCCCAGTCT
3' ss Score
7.87
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAAGCTGTCCCGGGAGAGAGTTTCATCCCCTGGTGGAAGTCCTGGGGATCCCTCATCCTCCACCTCAAG
Seq A exon
TCTGTCCCCAGCATCCCCTCCATCCAGTCCTAGAACCAAGGACCCTCCTACAGGCAGTCCTCCAGCCTCTCCAGGGCCCCAGAGCCCCAGCACCAAG
Seq C2 exon
CTGCCCCTGAGCCCGGACCTGCCAGGCCCCTGGTCCCTGGCCCTACCCTTGAGTGGCCCTCGTATCTCCCTCCCTGGGCAGCAGGGCTCAGAGGCCCGCGTCATCCGGGTCAGCATCGACAATGACCATGGCAATCTGTATCGGAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-'20-19,'20-18,21-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078818=RA=PU(22.7=39.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCCCCTGGTGGAAGTCC
R:
TGGTCATTGTCGATGCTGACC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]