RnoEX6034951 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22985931-22987373:-
Coord C1 exon
chr8:22987305-22987373
Coord A exon
chr8:22987127-22987223
Coord C2 exon
chr8:22985931-22986083
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGAAGTCTGTTCTCACCAGTGT
3' ss Score
4.36
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GAAGCTGTCCCGGGAGAAGAACCAGTCTCCTGGCGGGAGTCCCGGGGATCCACCCTCACCTACCTCCAG
Seq A exon
TGTGTCTCCAGGGTCTCCCCCAGCCAGTCCTAGAAGCCAAGACCCTCCTCCTGGCAGTCCTCCAGCTTCACCAGGGCCTCAGAGCCCCAGCACCAAG
Seq C2 exon
CTGTCCCTGAGCATGGAGCCACCAGGGCCCTGGCCCATGACCTTGACCCCGAGCAGCTCTCGAACTCCCCTCCTTGGGCAGCAGACTTCAGAGGCCCGCGTCATCCGCGTCAGCATCAACAATAACCATGGGAATCTCTATCGGAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'20-24,'20-22,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.843
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078818=RA=PU(22.7=39.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGAAGAACCAGTCTCCT
R:
ATTGTTGATGCTGACGCGGAT
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]