MmuEX6064517 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21974388-21975860:-
Coord C1 exon
chr9:21975792-21975860
Coord A exon
chr9:21975608-21975707
Coord C2 exon
chr9:21974388-21974540
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGATTCTGTGTTTTTACCAGTGT
3' ss Score
8.42
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAAGCTGTCCCGAGAGAAGAACTCATCTCCTGGCGGGAGTCCCGGGGATCCGTCCTCACCTACCTCCAG
Seq A exon
TGTGTCTCCAGGTTCACCCCCATCCAGCCCTAGAAACCGAGAGCCTCCTCCTCCGGGCAGTCCTCCAGCCTCCCCAGGGCCTCAGAGCCCCAGCACCAAG
Seq C2 exon
CTCTCCCTGACCATGGACCCACCAGGGCCCTGGCCCGTGACCTTGACTCCGAGCAGCTCCCGAGTTCCCCTCCTCGGGCAGCAGACGTCAGAGGCCCGCGTCATCAGAGTCAGCATCAACAATAACCACGGGAACCTGTATCGGAGCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-'20-41,'20-36,21-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078818=RA=PU(22.7=39.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTCCCGAGAGAAGAACT
R:
GATGCTCCGATACAGGTTCCC
Band lengths:
218-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types