BtaEX6038462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18070779-18073168:-
Coord C1 exon
chr7:18073073-18073168
Coord A exon
chr7:18072734-18072829
Coord C2 exon
chr7:18070779-18070976
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCCTTCCTCCACAGCTG
3' ss Score
12.48
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGTCAGGGTGCAGTGTGAGCTGTATGAATGGGGGCAGCTGTCGAGGGGAGTCTTGTCTGTGCCAGAGGGGCTACACAGGCACCGTGTGTGGGCAAC
Seq A exon
CTGTCTGTGACCACGGCTGCCACAACGGGGGCCGCTGCATTGGGCCAAACCACTGTGCCTGTGTGTACGGCTTCATGGGGCCTCAGTGTGAGAGAG
Seq C2 exon
ACTACCGGACGGGGCCCTGCTTTGGTCGAGTGGGCCCTGAGGGGTGCCAGCACCAGCTGACAGGCCTCATCTGCACCAAGGCGCTCTGCTGTGCCACTGTGGGCCGGGCCTGGGGCTTCCCATGTGAGCTCTGCCCAGCTCAGCCACATCCCTGCCGCCGGGGCTTCATCCCCAATATTAACACGGGGGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'5-9,'5-8,6-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCAGTGTGAGCTGTATG
R:
CTTGGTGCAGATGAGGCCTG
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]