GgaEX6050673 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56710576-56744408:-
Coord C1 exon
chrZ:56744313-56744408
Coord A exon
chrZ:56742153-56742248
Coord C2 exon
chrZ:56710576-56710773
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGTTAATTAAAGCTG
3' ss Score
6.67
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CTCAGCAGTGCAGCATCAGGTGCATGAACGGTGGTACCTGCGCTGACGACCGGTGCCAGTGCCAGAAGGGCTACATCGGGGTCTACTGTGGACAGC
Seq A exon
CTGTCTGTGAAAAAGGCTGCCAGAATGGAGGACGGTGTATTGGACCTAATCGCTGTGCATGTGTCTACGGGTTTACTGGTCCTCAGTGTGAAAGAG
Seq C2 exon
ATTACAGAACAGGTCCTTGTTTCACACAAGTTAATAACCAGATGTGTCAAGGCCAGCTAACTGGAATTGTTTGCACGAAAACCCTCTGTTGTGCAACCATTGGGCGTGCATGGGGTCACCCCTGTGAAATGTGCCCTGCTCAGCCTCAGCCATGTCGTCGCGGTTTCATCCCTAATATTCGTACTGGAGCATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'5-6,'5-3,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACATCGGGGTCTACTGT
R:
TGAGCAGGGCACATTTCACAG
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]