BtaEX6039569 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26707014-26756327:+
Coord C1 exon
chr7:26707014-26707109
Coord A exon
chr7:26711109-26711204
Coord C2 exon
chr7:26756130-26756327
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGTGTTTGTGTGCAGCTG
3' ss Score
9.72
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTCAGCAGTGCAGTGTTAGGTGCATGAATGGTGGGACCTGTGCGGATGACCATTGCCAGTGCCAGAAGGGATATATTGGAACTTACTGTGGACAAC
Seq A exon
CTGTCTGTGAAAATGGATGTCAGAATGGTGGACGTTGCATCGGACCTAACCGCTGTGCCTGTGTTTATGGATTCACTGGCCCGCAGTGTGAAAGAG
Seq C2 exon
ATTACAGGACAGGTCCGTGTTTCACTCAGGTCAACAACCAGATGTGCCAGGGGCAGCTCACAGGCATCGTGTGTACAAAGACTCTGTGCTGCGCCACCACTGGGCGGGCCTGGGGTCACCCCTGCGAGATGTGCCCAGCCCAGCCTCAGCCCTGCCGACGGGGCTTCATCCCCAACATACGCACTGGAGCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068312=TB=WD(100=64.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGTGCAGTGTTAGGTG
R:
GTACACACGATGCCTGTGAGC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]