RnoEX0004123 @ rn6
Exon Skipping
Gene
ENSRNOG00000052190 | AABR07072602.1
Description
NA
Coordinates
chr18:53216095-53263346:-
Coord C1 exon
chr18:53263251-53263346
Coord A exon
chr18:53252673-53252768
Coord C2 exon
chr18:53216095-53216467
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTTTGTCCGCAGCTG
3' ss Score
10.75
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTCAGCAGTGTAGTGTGAGGTGCATGAACGGTGGGACCTGTGCGGATGACCACTGTCAGTGCCAGAAGGGATACATCGGGACCTACTGTGGACAAC
Seq A exon
CTGTCTGTGAGAATGGATGCCAGAATGGTGGGCGTTGCATCGGCCCTAACCGCTGTGCTTGTGTTTATGGATTCACCGGGCCACAGTGCGAAAGAG
Seq C2 exon
ATTACAGGACAGGCCCATGTTTCACTCAAGTCAATAATCAGATGTGCCAGGGGCAGCTGACAGGCATCGTCTGTACGAAGACGCTGTGCTGTGCCACCATTGGGCGAGCCTGGGGTCATCCTTGTGAGATGTGCCCAGCCCAGCCTCAGCCCTGCCGCCGGGGCTTCATCCCCAACATCCGCACTGGAGCATGTCAGGGTAAGTCAACTACTACTTAGAATATATAATTCTATAATAAGAGGGCGAGCGTCTCTGTGCCTGTATCCAGATGGCACAGTTCTGCTGTAGAGACTAATTTCTTCTCTCTTCTCCGTGATCCATGATGTCTTTTTCTCCAGATAATCTTCTGTGACGCCTCATAAGTGGCTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052190-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGTGTAGTGTGAGGTGC
R:
GTACAGACGATGCCTGTCAGC
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]