DreEX6097198 @ danRer10
Exon Skipping
Gene
ENSDARG00000087398 | fbn2b
Description
fibrillin 2b [Source:ZFIN;Acc:ZDB-GENE-090112-3]
Coordinates
chr22:4210090-4225640:-
Coord C1 exon
chr22:4225545-4225640
Coord A exon
chr22:4221934-4222029
Coord C2 exon
chr22:4210090-4210312
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTGTAAATTTTTCAGCGG
3' ss Score
6.61
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCCAGTCCTGCAGCGTCAGATGTATGAATGGTGGGATGTGTAATGAAGACGCCTGCTCCTGTCAGAAGGGATACACAGGAACTCACTGTGGACAAC
Seq A exon
CGGTGTGCGAGAGCGGATGTCAGAACGGCGGCCGCTGCATCGGACCCAACAGATGTGCCTGCGTTTACGGTTTCACCGGGCCGCAGTGCGAGAGAG
Seq C2 exon
ACTACCGGACTGGACCGTGCTTCACTCAGGTCAACAATCAGATGTGCCAGGGTCAGCTGAGTGGCATCGTGTGCACCAAAACGCTCTGCTGCGCCACCATTGGCCGAGCGTGGGGTCACCCGTGTGAGATGTGCCCTGCCCAACCACACCCCTGCCGGAGAGGATTCATTCCCAACATCCGCACCGGTGCATGCCAAGGTAAGCACGAGCGTCAACATTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087398-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=39.4)
A:
NO
C2:
PF0068312=TB=WD(100=57.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCAGCGTCAGATGTA
R:
GCGTTTTGGTGCACACGATG
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]